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计算技术研究所 [5]
理论物理研究所 [4]
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期刊论文 [9]
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ProALIGN: Directly Learning Alignments for Protein Structure Prediction via Exploiting Context-Specific Alignment Motifs
期刊论文
JOURNAL OF COMPUTATIONAL BIOLOGY, 2022
作者:
Kong, Lupeng
;
Ju, Fusong
;
Zheng, Wei-mou
;
Zhu, Jianwei
;
Sun, Shiwei
收藏
  |  
浏览/下载:8/0
  |  
提交时间:2023/01/16
SERVER
FALCON2: a web server for high-quality prediction of protein tertiary structures
期刊论文
BMC BIOINFORMATICS, 2021, 卷号: 22, 期号: 1, 页码: 14
作者:
Kong, Lupeng
;
Ju, Fusong
;
Zhang, Haicang
;
Sun, Shiwei
;
Bu, Dongbo
收藏
  |  
浏览/下载:38/0
  |  
提交时间:2021/12/01
Protein structure prediction
Template-based modeling
Ab initio prediction
Protein structure prediction web service
CopulaNet: Learning residue co-evolution directly from multiple sequence alignment for protein structure prediction
期刊论文
NATURE COMMUNICATIONS, 2021, 卷号: 12, 期号: 1, 页码: 9
作者:
Ju, Fusong
;
Zhu, Jianwei
;
Shao, Bin
;
Kong, Lupeng
;
Liu, Tie-Yan
收藏
  |  
浏览/下载:36/0
  |  
提交时间:2021/12/01
CopulaNet: Learning residue co-evolution directly from multiple sequence alignment for protein structure prediction
期刊论文
NATURE COMMUNICATIONS, 2021, 卷号: 12, 期号: 1, 页码: 2535
作者:
Ju, Fusong
;
Zhu, Jianwei
;
Shao, Bin
;
Kong, Lupeng
;
Liu, Tie-Yan
收藏
  |  
浏览/下载:47/0
  |  
提交时间:2021/09/27
CONTACTS
POTENTIALS
ISSEC: inferring contacts among protein secondary structure elements using deep object detection
期刊论文
BMC BIOINFORMATICS, 2020, 卷号: 21, 期号: 1, 页码: 13
作者:
Zhang, Qi
;
Zhu, Jianwei
;
Ju, Fusong
;
Kong, Lupeng
;
Sun, Shiwei
收藏
  |  
浏览/下载:41/0
  |  
提交时间:2021/12/01
Protein structure
Secondary structure elements
Inter-SSE contacts
ISSEC: inferring contacts among protein secondary structure elements using deep object detection
期刊论文
BMC BIOINFORMATICS, 2020, 卷号: 21, 期号: 1, 页码: 503
作者:
Zhang, Qi
;
Zhu, Jianwei
;
Ju, Fusong
;
Kong, Lupeng
;
Sun, Shiwei
收藏
  |  
浏览/下载:49/0
  |  
提交时间:2021/09/27
HELIX-HELIX INTERACTIONS
INVERSE COVARIANCE ESTIMATION
RESIDUE CONTACTS
BETA-SHEETS
PREDICTION
MEMBRANE
Constructing effective energy functions for protein structure prediction through broadening attraction-basin and reverse Monte Carlo sampling
期刊论文
BMC BIOINFORMATICS, 2019, 卷号: 20, 页码: 10
作者:
Zhang, Haicang
;
Wang, Chao
;
Bu, Dongbo
;
Zheng, Wei-Mou
;
Sun, Shiwei
收藏
  |  
浏览/下载:82/0
  |  
提交时间:2019/08/16
Protein structure prediction
Energy function
Attraction-basin
Reverse Monte Carlo sampling
Monte Carlo search
Linear program
Constructing effective energy functions for protein structure prediction through broadening attraction-basin and reverse Monte Carlo sampling
期刊论文
BMC BIOINFORMATICS, 2019, 卷号: 20, 页码: 135
作者:
Wang, Chao
;
Wei, Yi
;
Zhang, Haicang
;
Kong, Lupeng
;
Sun, Shiwei
收藏
  |  
浏览/下载:3/0
  |  
提交时间:2020/11/26
TERTIARY STRUCTURES
FRAGMENTS
Improving protein fold recognition by extracting fold-specific features from predicted residue-residue contacts
期刊论文
BIOINFORMATICS, 2017, 卷号: 33, 期号: 23, 页码: 3749-3757
作者:
Zhu, Jianwei
;
Zhang, Haicang
;
Li, Shuai Cheng
;
Wang, Chao
;
Kong, Lupeng
收藏
  |  
浏览/下载:25/0
  |  
提交时间:2019/12/10
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