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学科主题:Biochemistry & Molecular Biology
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ProALIGN: Directly Learning Alignments for Protein Structure Prediction via Exploiting Context-Specific Alignment Motifs
期刊论文
JOURNAL OF COMPUTATIONAL BIOLOGY, 2022
作者:
Kong, Lupeng
;
Ju, Fusong
;
Zheng, Wei-mou
;
Zhu, Jianwei
;
Sun, Shiwei
收藏
  |  
浏览/下载:13/0
  |  
提交时间:2023/01/16
SERVER
Seq-SetNet: directly exploiting multiple sequence alignment for protein secondary structure prediction
期刊论文
BIOINFORMATICS, 2022, 卷号: 38, 期号: 4, 页码: 990-996
作者:
Ju, Fusong
;
Zhu, Jianwei
;
Zhang, Qi
;
Wei, Guozheng
;
Sun, Shiwei
收藏
  |  
浏览/下载:13/0
  |  
提交时间:2023/01/16
RECOGNITION
FRAGMENTS
FOLD
Phylogenomic conflict analyses in the apple genus Malus s.l. reveal widespread hybridization and allopolyploidy driving diversification, with insights into the complex biogeographic history in the Northern Hemisphere
期刊论文
JOURNAL OF INTEGRATIVE PLANT BIOLOGY, 2022, 卷号: 64, 期号: 5, 页码: 1020-1043
作者:
Liu, Bin-Bin
;
Ren, Chen
;
Kwak, Myounghai
;
Hodel, Richard G. J.
;
Xu, Chao
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  |  
浏览/下载:0/0
  |  
提交时间:2024/03/07
deep genome skimming
genomic discordance
historical biogeography
massive extinction
reticulate evolution
single-copy nuclear genes
iTRAQ-Based Quantitative Proteomics Analysis Reveals the Mechanism of Golden-Yellow Leaf Mutant in Hybrid Paper Mulberry
期刊论文
INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES, 2022, 卷号: 23, 期号: 1
作者:
Wang, Fenfen
;
Chen, Naizhi
;
Shen, Shihua
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  |  
浏览/下载:1/0
  |  
提交时间:2024/03/07
chlorophyll
chloroplast
photosynthesis
ribosome
proteome
Proteomics Evidence of a Systemic Response to Desiccation in the Resurrection Plant Haberlea rhodopensis
期刊论文
INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES, 2022, 卷号: 23, 期号: 15
作者:
Mladenov, Petko
;
Zasheva, Diana
;
Planchon, Sebastien
;
Leclercq, Celine C.
;
Falconet, Denis
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  |  
浏览/下载:1/0
  |  
提交时间:2024/03/07
resurrection plant
proteomics
systems biology
subcellular fractionation
drought stress
dehydrin
ISSEC: inferring contacts among protein secondary structure elements using deep object detection
期刊论文
BMC BIOINFORMATICS, 2020, 卷号: 21, 期号: 1, 页码: 503
作者:
Zhang, Qi
;
Zhu, Jianwei
;
Ju, Fusong
;
Kong, Lupeng
;
Sun, Shiwei
收藏
  |  
浏览/下载:49/0
  |  
提交时间:2021/09/27
HELIX-HELIX INTERACTIONS
INVERSE COVARIANCE ESTIMATION
RESIDUE CONTACTS
BETA-SHEETS
PREDICTION
MEMBRANE
Bioactive compounds induced in Physalis angulata L. by methyl-jasmonate: an investigation of compound accumulation patterns and biosynthesis-related candidate genes
期刊论文
PLANT MOLECULAR BIOLOGY, 2020, 卷号: 103, 期号: 3, 页码: 341-354
作者:
Zhan, Xiaori
;
Luo, Xiujun
;
He, Jinyu
;
Zhang, Chengchao
;
Liao, Xinyue
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  |  
浏览/下载:20/0
  |  
提交时间:2022/03/01
Chlorogenic acid
Flavonoids
Physalins
Physalis
Methyl-jasmonate (MeJA)
Withanolides
Constructing effective energy functions for protein structure prediction through broadening attraction-basin and reverse Monte Carlo sampling
期刊论文
BMC BIOINFORMATICS, 2019, 卷号: 20, 页码: 135
作者:
Wang, C
;
Wei, Y
;
Zhang, HC
;
Kong, LP
;
Sun, SW
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  |  
浏览/下载:0/0
  |  
提交时间:2019/07/19
TERTIARY STRUCTURES
FRAGMENTS
Constructing effective energy functions for protein structure prediction through broadening attraction-basin and reverse Monte Carlo sampling
期刊论文
BMC BIOINFORMATICS, 2019, 卷号: 20, 页码: 135
作者:
Wang, Chao
;
Wei, Yi
;
Zhang, Haicang
;
Kong, Lupeng
;
Sun, Shiwei
收藏
  |  
浏览/下载:3/0
  |  
提交时间:2020/11/26
TERTIARY STRUCTURES
FRAGMENTS
Predicting protein inter-residue contacts using composite likelihood maximization and deep learning
期刊论文
BMC BIOINFORMATICS, 2019, 卷号: 20, 期号: 1, 页码: 537
作者:
Zhang, Haicang
;
Zhang, Qi
;
Ju, Fusong
;
Zhu, Jianwei
;
Gao, Yujuan
收藏
  |  
浏览/下载:4/0
  |  
提交时间:2020/06/16
COUPLING ANALYSIS
SEQUENCE
EVOLUTIONARY
INFORMATION
NETWORKS
RANK
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