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期刊论文 [16]
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ScLSTM: single-cell type detection by siamese recurrent network and hierarchical clustering
期刊论文
BMC BIOINFORMATICS, 2023, 卷号: 24, 期号: 1, 页码: 15
作者:
Jiang, Hanjing
;
Huang, Yabing
;
Li, Qianpeng
;
Feng, Boyuan
收藏
  |  
浏览/下载:1/0
  |  
提交时间:2023/12/21
Single-cell
ScRNA-seq
Siamese LSTM
Cell type detection
Deciphering the Spatial Modular Patterns of Tissues by Integrating Spatial and Single-Cell Transcriptomic Data
期刊论文
JOURNAL OF COMPUTATIONAL BIOLOGY, 2022, 页码: 14
作者:
Shan, Xu
;
Chen, Jinyu
;
Dong, Kangning
;
Zhou, Wei
;
Zhang, Shihua
收藏
  |  
浏览/下载:8/0
  |  
提交时间:2023/02/07
data integration
single-cell transcriptomics
spatial modular patterns
spatial transcriptomics
Spectral clustering of single cells using Siamese nerual network combined with improved affinity matrix
期刊论文
BRIEFINGS IN BIOINFORMATICS, 2022, 页码: 12
作者:
Jiang, Hanjing
;
Huang, Yabing
;
Li, Qianpeng
收藏
  |  
浏览/下载:18/0
  |  
提交时间:2022/06/10
scRNA-seq
Sigmoid kernel
Siamese CNN
improved spectral clustering
hDirect-MAP: projection-free single-cell modeling of response to checkpoint immunotherapy
期刊论文
BRIEFINGS IN BIOINFORMATICS, 2022, 卷号: 23, 期号: 2, 页码: 16
作者:
Lu, Yong
;
Xue, Gang
;
Zheng, Ningbo
;
Han, Kun
;
Yang, Wenzhong
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  |  
浏览/下载:13/0
  |  
提交时间:2023/02/07
single-cell RNA sequencing (scRNA-seq)
single-cell mass cytometry (CyTOF)
Pareto optimization
projection-free single-cell modeling
response to immune checkpoint blockade
An Efficient and Universal Protoplast Isolation Protocol Suitable for Transient Gene Expression Analysis and Single-Cell RNA Sequencing
期刊论文
INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES, 2022, 卷号: 23, 期号: 7
作者:
Wang, Juanjuan
;
Wang, Yang
;
Lu, Tianfeng
;
Yang, Xia
;
Liu, Jing
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  |  
浏览/下载:0/0
  |  
提交时间:2024/03/07
protoplast isolation
cell walls
Chirita pumila
protocol
transient gene expression
single-cell RNA sequencing
Identifying phenotype-associated subpopulations by integrating bulk and single-cell sequencing data
期刊论文
NATURE BIOTECHNOLOGY, 2021, 页码: 18
作者:
Sun, Duanchen
;
Guan, Xiangnan
;
Moran, Amy E.
;
Wu, Ling-Yun
;
Qian, David Z.
收藏
  |  
浏览/下载:28/0
  |  
提交时间:2022/04/02
Transcriptome Regulation by Oncogenic ALK Pathway in Mammalian Cortical Development Revealed by Single-Cell RNA Sequencing
期刊论文
CEREBRAL CORTEX, 2021, 卷号: 31, 期号: 8, 页码: 3911-3924
作者:
Mao, Rui
;
Zhang, Xiaoyun
;
Kong, Youyong
;
Wu, Shanshan
;
Huo, Hai-qin
收藏
  |  
浏览/下载:34/0
  |  
提交时间:2021/08/17
anaplastic lymphoma kinase
cerebral organoid
neurodevelopment
neural progenitor cell
single-cell RNA sequencing
A kernel non-negative matrix factorization framework for single cell clustering
期刊论文
APPLIED MATHEMATICAL MODELLING, 2021, 卷号: 90, 页码: 875-888
作者:
Jiang, Hao
;
Yi, Ming
;
Zhang, Shihua
收藏
  |  
浏览/下载:9/0
  |  
提交时间:2021/04/26
Single cell RNA-sequencing
Kernel non-negative matrix factorization
Cellular heterogeneity
Imputing single-cell RNA-seq data by considering cell heterogeneity and prior expression of dropouts
期刊论文
JOURNAL OF MOLECULAR CELL BIOLOGY, 2021, 卷号: 13, 期号: 1, 页码: 29-40
作者:
Zhang, Lihua
;
Zhang, Shihua
收藏
  |  
浏览/下载:14/0
  |  
提交时间:2021/10/26
single-cell RNA-seq
dropout
imputation
low-rank
systems biology
NeuralEE: A GPU-Accelerated Elastic Embedding Dimensionality Reduction Method for Visualizing Large-Scale scRNA-Seq Data
期刊论文
FRONTIERS IN GENETICS, 2020, 卷号: 11, 页码: 8
作者:
Xiong, Jiankang
;
Gong, Fuzhou
;
Wan, Lin
;
Ma, Liang
收藏
  |  
浏览/下载:20/0
  |  
提交时间:2021/01/14
single-cell RNA sequencing
elastic embedding
neural networks
large-scale
stochastic optimization
parametric models
generalizable models
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