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上海药物研究所 [37]
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期刊论文 [37]
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2020 [1]
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Exploration of Fragment Binding Poses Leading to Efficient Discovery of Highly Potent and Orally Effective Inhibitors of FABP4 for Anti-inflammation
期刊论文
JOURNAL OF MEDICINAL CHEMISTRY, 2020, 卷号: 63, 期号: 8, 页码: 4090-4106
作者:
Su, Haixia
;
Zou, Yi
;
Chen, Guofeng
;
Dou, Huixia
;
Xie, Hang
收藏
  |  
浏览/下载:32/0
  |  
提交时间:2020/07/01
Deciphering molecular mechanism behind conformational change of the Sao Paolo metallo-beta-lactamase 1 by using enhanced sampling
期刊论文
JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS, 2019, 页码: 12
作者:
Chen, Jianzhong
;
Wang, Jinan
;
Pang, Laixue
;
Wang, Wei
;
Zhao, Juan
收藏
  |  
浏览/下载:47/0
  |  
提交时间:2020/07/01
Sao paolo metallo-beta-lactamase-1
REMD simulations
normal mode analysis
principal component analysis
drug resistance of antibiotics
Molecular Mechanism of Binding Selectivity of Inhibitors toward BACE1 and BACE2 Revealed by Multiple Short Molecular Dynamics Simulations and Free-Energy Predictions
期刊论文
ACS CHEMICAL NEUROSCIENCE, 2019, 卷号: 10, 期号: 10, 页码: 4303-4318
作者:
Chen, Jianzhong
;
Wang, Jinan
;
Yin, Baohua
;
Pang, Laixue
;
Wang, Wei
收藏
  |  
浏览/下载:114/0
  |  
提交时间:2020/07/01
beta-amyloid cleaving enzyme
binding selectivity
MSMD
hierarchical clustering analysis
MM-GBSA
Exploring binding mechanisms of VEGFR2 with three drugs lenvatinib, sorafenib, and sunitinib by molecular dynamics simulation and free energy calculation
期刊论文
CHEMICAL BIOLOGY & DRUG DESIGN, 2019, 卷号: 93, 期号: 5, 页码: 934-948
作者:
Wang, Yu
;
Peng, Cheng
;
Wang, Guimin
;
Xu, Zhijian
;
Luo, Yongfeng
收藏
  |  
浏览/下载:17/0
  |  
提交时间:2020/07/01
hydrophobic contact scanning
MM
GBSA
molecular dynamics simulation
VEGFR2-drugs interaction
Elucidation of lid open and orientation of lipase activated in interfacial activation by amphiphilic environment
期刊论文
INTERNATIONAL JOURNAL OF BIOLOGICAL MACROMOLECULES, 2018, 卷号: 119, 页码: 1211-1217
作者:
Cheng, Cheng
;
Jiang, Tianyue
;
Wu, Yulu
;
Cui, Lupeng
;
Qin, Song
收藏
  |  
浏览/下载:35/0
  |  
提交时间:2019/01/08
Lipase
Amphiphilic media
Interfacial activation
Inhibiting mechanism of small molecule toward the p53-MDM2 interaction: A molecular dynamic exploration
期刊论文
CHEMICAL BIOLOGY & DRUG DESIGN, 2018, 卷号: 92, 期号: 4, 页码: 1763-1777
作者:
Chen, Jianzhong
;
Wang, Jinan
;
Pang, Laixue
;
Zhu, Weiliang
收藏
  |  
浏览/下载:40/0
  |  
提交时间:2019/01/08
hydrophobic contact scanning
MM-GBSA
p53-MDM2 interaction
principal component analysis
solvated interaction energy
Gorge Motions of Acetylcholinesterase Revealed by Microsecond Molecular Dynamics Simulations
期刊论文
SCIENTIFIC REPORTS, 2017, 卷号: 7
作者:
Cheng, Shanmei
;
Song, Wanling
;
Yuan, Xiaojing
;
Xu, Yechun
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  |  
浏览/下载:11/0
  |  
提交时间:2019/01/08
Determining Protein Folding Pathway and Associated Energetics through Partitioned Integrated-Tempering-Sampling Simulation
期刊论文
JOURNAL OF CHEMICAL THEORY AND COMPUTATION, 2017, 卷号: 13, 期号: 3, 页码: 1229-1243
作者:
Shao, Qiang
;
Shi, Jiye
;
Zhu, Weiliang
收藏
  |  
浏览/下载:8/0
  |  
提交时间:2019/01/08
Zinc ion-induced conformational changes in new Delphi metallo-beta-lactamase 1 probed by molecular dynamics simulations and umbrella sampling
期刊论文
PHYSICAL CHEMISTRY CHEMICAL PHYSICS, 2017, 卷号: 19, 期号: 4, 页码: 3067-3075
作者:
Chen, Jianzhong
;
Wang, Jinan
;
Zhu, Weiliang
收藏
  |  
浏览/下载:15/0
  |  
提交时间:2019/01/08
A comparative study of trypsin specificity based on QM/MM molecular dynamics simulation and QM/MM GBSA calculation
期刊论文
JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS, 2015, 卷号: 33, 期号: 12, 页码: 2606-2618
作者:
Chen, Jianzhong
;
Wang, Jinan
;
Zhang, Qinggang
;
Chen, Kaixian
;
Zhu, Weiliang
收藏
  |  
浏览/下载:17/0
  |  
提交时间:2019/01/08
QM
MM molecular dynamics simulations
MM-GBSA method
trypsin specificity
semi-empirical Hamiltonian
binding free energies
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