itol.toolkit accelerates working with iTOL (Interactive Tree of Life) by an automated generation of annotation files

doi:10.1093/bioinformatics/btad339

CORC > 海洋研究所 > 中国科学院海洋研究所 > 实验海洋生物学重点实验室

	itol.toolkit accelerates working with iTOL (Interactive Tree of Life) by an automated generation of annotation files
	Zhou, Tong 1,2,3; Xu, Kuidong 1,2,3; Zhao, Feng 1,2,3; Liu, Weiyue 1,3; Li, Longzhao 1,3; Hua, Zhongyi 5; Zhou, Xin 4
刊名	BIOINFORMATICS
	2023-06-01
卷号	39 期号:6 页码:4
ISSN号	1367-4803
DOI	10.1093/bioinformatics/btad339
通讯作者	Xu, Kuidong(kxu@qdio.ac.cn)
英文摘要	iTOL is a powerful and comprehensive phylogenetic tree visualization engine. However, adjusting to new templates can be time-consuming, especially when many templates are available. We developed an R package namely itol.toolkit to help users generate all 23 types of annotation files in iTOL. This R package also provides an all-in-one data structure to store data and themes, accelerating the step from metadata to annotation files of iTOL visualizations through automatic workflows.
资助项目	National Natural Science Foundation of China[41930533] ; National Natural Science Foundation of China[41876171] ; Strategic Priority Research Program of the Chinese Academy of Sciences[XDB42000000] ; Youth Innovation Promotion Association CAS[2022206]
WOS关键词	REPRODUCIBILITY
WOS研究方向	Biochemistry & Molecular Biology ; Biotechnology & Applied Microbiology ; Computer Science ; Mathematical & Computational Biology ; Mathematics
语种	英语
出版者	OXFORD UNIV PRESS
WOS记录号	WOS:001004164400010
内容类型	期刊论文
源URL	[http://ir.qdio.ac.cn/handle/337002/182454]
专题	海洋研究所_实验海洋生物学重点实验室
通讯作者	Xu, Kuidong
作者单位	1.Univ Chinese Acad Sci, Beijing 100700, Peoples R China 2.Chinese Acad Sci, Inst Oceanol, Shandong Prov Key Lab Expt Marine Biol, Qingdao 266071, Peoples R China 3.Chinese Acad Sci, Inst Oceanol, Lab Marine Organism Taxon & Phylogeny, Qingdao Key Lab Marine Biodivers & Conservat, Qingdao 266071, Peoples R China 4.Chinese Acad Sci, Inst Microbiol, State Key Lab Mycol, Beijing 100101, Peoples R China 5.China Acad Chinese Med Sci, Natl Resource Ctr Chinese Mat Med, Beijing 100700, Peoples R China
推荐引用方式 GB/T 7714	Zhou, Tong,Xu, Kuidong,Zhao, Feng,et al. itol.toolkit accelerates working with iTOL (Interactive Tree of Life) by an automated generation of annotation files[J]. BIOINFORMATICS,2023,39(6):4.
APA	Zhou, Tong.,Xu, Kuidong.,Zhao, Feng.,Liu, Weiyue.,Li, Longzhao.,...&Zhou, Xin.(2023).itol.toolkit accelerates working with iTOL (Interactive Tree of Life) by an automated generation of annotation files.BIOINFORMATICS,39(6),4.
MLA	Zhou, Tong,et al."itol.toolkit accelerates working with iTOL (Interactive Tree of Life) by an automated generation of annotation files".BIOINFORMATICS 39.6(2023):4.