The complete plastome of Blidingia marginata and comparative analysis with the relative species in Ulvales

doi:10.1016/j.aquabot.2022.103568

CORC > 海洋研究所 > 中国科学院海洋研究所 > 海洋生物分类与系统演化实验室

	The complete plastome of Blidingia marginata and comparative analysis with the relative species in Ulvales
	Gao, Dahai 6,7; Sun, Zhongmin 4,5; Bi, Guiqi 3; Zhang, Xue 1,2
刊名	AQUATIC BOTANY
	2022-12-01
卷号	183 页码:8
关键词	Blidingia marginata Chlorophyta Chloroplast genome Comparative genomics Phylogenetic analysis
ISSN号	0304-3770
DOI	10.1016/j.aquabot.2022.103568
通讯作者	Sun, Zhongmin(zhmsun@hotmail.com)
英文摘要	In the present study, the whole chloroplast (cp) genome of B. marginata was characterized for the first time and genomic features were comparatively analyzed with six relative species in Ulvales. The cp genome of B. marginata was 170, 562 bp in length, exhibiting similar general structure but different in GC content from Ulva and Pseudendoclonium. A total of 113 unique genes were annotated, including 84 protein-coding genes, 26 tRNA and 3 rRNA. A higher level of rearrangements and small syntenic blocks exists comparing the locally collinear blocks. Codon usage analysis identified 30 biased codons with A or U-ended. Sequence analysis detected a total of 23 forward repeats, 18 palindrome repeats, 8 reverse repeats and 38 SSRs with different types. The phylogenetic analyses based on the entire cp genome suggested that Blidingia is closer to Ulva than to Pseudendoclonium. The entire cp genome of Blidingia provides a valuable resource for further studies.
资助项目	Strategic Priority Research Pro- gram of the Chinese Academy of Sciences[XDA23050304]
WOS研究方向	Plant Sciences ; Marine & Freshwater Biology
语种	英语
出版者	ELSEVIER
WOS记录号	WOS:000861158500001
内容类型	期刊论文
源URL	[http://ir.qdio.ac.cn/handle/337002/180735]
专题	海洋研究所_海洋生物分类与系统演化实验室
通讯作者	Sun, Zhongmin
作者单位	1.Tianjin Marine Ranching Tech Engn Ctr, Tianjin 300457, Peoples R China 2.Tianjin Bohai Sea Fisheries Res Inst, Tianjin 300457, Peoples R China 3.Chinese Acad Agr Sci AGIS, Agr Genomes Inst Shenzhen, Shenzhen 518120, Peoples R China 4.Chinese Acad Sci, Ctr Ocean Mega Sci, Qingdao 266071, Peoples R China 5.Chinese Acad Sci, Inst Oceanol, Dept Marine Organism Taxon & Phylogeny, Qingdao 266071, Peoples R China 6.Shanghai Ocean Univ, Shanghai Aquaculture Engn Technol Res Ctr, Shanghai 201306, Peoples R China 7.Shanghai Ocean Univ, Key Lab Explorat & Utilizat Aquat Genet Resources, Minist Educ, Shanghai 201306, Peoples R China
推荐引用方式 GB/T 7714	Gao, Dahai,Sun, Zhongmin,Bi, Guiqi,et al. The complete plastome of Blidingia marginata and comparative analysis with the relative species in Ulvales[J]. AQUATIC BOTANY,2022,183:8.
APA	Gao, Dahai,Sun, Zhongmin,Bi, Guiqi,&Zhang, Xue.(2022).The complete plastome of Blidingia marginata and comparative analysis with the relative species in Ulvales.AQUATIC BOTANY,183,8.
MLA	Gao, Dahai,et al."The complete plastome of Blidingia marginata and comparative analysis with the relative species in Ulvales".AQUATIC BOTANY 183(2022):8.