Comparative analysis of complete chloroplast genome sequences of two tropical trees Machilus yunnanensis and Machilus balansae in the family Lauraceae

doi:10.3389/fpls.2015.00662

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	Comparative analysis of complete chloroplast genome sequences of two tropical trees Machilus yunnanensis and Machilus balansae in the family Lauraceae
	Song, Yu 5; Dong, Wenpan 2,3; Liu, Bing 3; Xu, Chao 3; Yao, Xin 5; Gao, Jie 4; Corlett, Richard T.
刊名	FRONTIERS IN PLANT SCIENCE
	2015
卷号	6
关键词	mutation genome chloroplast Machilus Lauraceae
ISSN号	1664-462X
DOI	10.3389/fpls.2015.00662
文献子类	Article
英文摘要	Machilus is a large (c. 100 sp.) genus of trees in the family Lauraceae, distributed in tropical and subtropical East Asia. Both molecular species identification and phylogenetic studies of this morphologically uniform genus have been constrained by insufficient variable sites among frequently used biomarkers. To better understand the mutation patterns in the chloroplast genome of Machilus, the complete plastomes of two species were sequenced. The plastomes of Machilus yunnanensis and M. balansae were 152, 622 and 152, 721 bp, respectively. Seven highly variable regions between the two Machilus species were identified and 297 mutation events, including one micro-inversion in the ccsA-ndhD region, 65 indels, and 231 substitutions, were accurately located. Thirty-six microsatellite sites were found for use in species identification and 95 single-nucleotide changes were identified in gene coding regions.
学科主题	Plant Sciences
出版地	LAUSANNE
WOS关键词	MOLECULAR EVOLUTION ; PHYLOGENY ; ORGANIZATION ; POLYMORPHISM ; DELETION
WOS研究方向	Science Citation Index Expanded (SCI-EXPANDED)
语种	英语
出版者	FRONTIERS MEDIA SA
WOS记录号	WOS:000360442100001
资助机构	1000 Talents Program [WQ20110491035]
内容类型	期刊论文
源URL	[http://ir.ibcas.ac.cn/handle/2S10CLM1/26008]
专题	系统与进化植物学国家重点实验室
作者单位	1.Chinese Acad Sci, Xishuangbanna Trop Botan Garden, Key Lab Trop Forest Ecol, Mengla 666303, Peoples R China 2.Chinese Acad Sci, Grad Sch, Beijing 666303, Peoples R China 3.Peking Univ, Acad Adv Interdisciplinary Studies, Peking Tsinghua Ctr Life Sci, Beijing 100871, Peoples R China 4.Chinese Acad Sci, Inst Bot, State Key Lab Systemat & Evolutionary Bot, Beijing, Peoples R China 5.[Song, Yu; Yao, Xin; Corlett, Richard T.] Chinese Acad Sci, Xishuangbanna Trop Botan Garden, Ctr Integrat Conservat, Mengla 666303, Peoples R China
推荐引用方式 GB/T 7714	Song, Yu,Dong, Wenpan,Liu, Bing,et al. Comparative analysis of complete chloroplast genome sequences of two tropical trees Machilus yunnanensis and Machilus balansae in the family Lauraceae[J]. FRONTIERS IN PLANT SCIENCE,2015,6.
APA	Song, Yu.,Dong, Wenpan.,Liu, Bing.,Xu, Chao.,Yao, Xin.,...&Corlett, Richard T..(2015).Comparative analysis of complete chloroplast genome sequences of two tropical trees Machilus yunnanensis and Machilus balansae in the family Lauraceae.FRONTIERS IN PLANT SCIENCE,6.
MLA	Song, Yu,et al."Comparative analysis of complete chloroplast genome sequences of two tropical trees Machilus yunnanensis and Machilus balansae in the family Lauraceae".FRONTIERS IN PLANT SCIENCE 6(2015).