De novo transcriptome assembly databases for the butterfly orchid Phalaenopsis equestris

doi:10.1038/sdata.2016.83

CORC > 植物研究所 > 中国科学院植物研究所 > 系统与进化植物学国家重点实验室

	De novo transcriptome assembly databases for the butterfly orchid Phalaenopsis equestris
	Niu, Shan-Ce ; Xu, Qing ; Zhang, Guo-Qiang ; Zhang, Yong-Qiang ; Tsai, Wen-Chieh ; Hsu, Jui-Ling ; Liang, Chieh-Kai ; Luo, Yi-Bo ; Liu, Zhong-Jian
刊名	SCIENTIFIC DATA
	2016
卷号	3
DOI	10.1038/sdata.2016.83
文献子类	Article; Data Paper
英文摘要	Orchids are renowned for their spectacular flowers and ecological adaptations. After the sequencing of the genome of the tropical epiphytic orchid Phalaenopsis equestris, we combined Illumina HiSeq2000 for RNA-Seq and Trinity for de novo assembly to characterize the transcriptomes for 11 diverse P. equestris tissues representing the root, stem, leaf, flower buds, column, lip, petal, sepal and three developmental stages of seeds. Our aims were to contribute to a better understanding of the molecular mechanisms driving the analysed tissue characteristics and to enrich the available data for P. equestris. Here, we present three databases. The first dataset is the RNA-Seq raw reads, which can be used to execute new experiments with different analysis approaches. The other two datasets allow different types of searches for candidate homologues. The second dataset includes the sets of assembled unigenes and predicted coding sequences and proteins, enabling a sequence-based search. The third dataset consists of the annotation results of the aligned unigenes versus the Nonredundant (Nr) protein database, Kyoto Encyclopaedia of Genes and Genomes (KEGG) and Clusters of Orthologous Groups (COG) databases with low e-values, enabling a name-based search.
学科主题	Multidisciplinary Sciences
电子版国际标准刊号	2052-4463
出版地	BERLIN
WOS关键词	EXPRESSION ANALYSIS ; FLOWER BUDS ; FAMILY ; GENERATION ; EPIPHYTISM ; PROTEINS ; ESTS
WOS研究方向	Science Citation Index Expanded (SCI-EXPANDED)
语种	英语
出版者	NATURE PORTFOLIO
WOS记录号	WOS:000390232700001
内容类型	期刊论文
源URL	[http://ir.ibcas.ac.cn/handle/2S10CLM1/24390]
专题	系统与进化植物学国家重点实验室
作者单位	1.Chinese Acad Sci, Inst Bot, State Key Lab Systemat & Evolutionary Bot, Beijing 100093, Peoples R China 2.[Niu, Shan-Ce 3.Univ Chinese Acad Sci, Beijing 100049, Peoples R China 4.[Xu, Qing 5.Zhang, Guo-Qiang 6.Zhang, Yong-Qiang 7.Hsu, Jui-Ling 8.Natl Orchid Conservat Ctr China, Shenzhen Key Lab Orchid Conservat & Utilizat, Shenzhen 518114, Peoples R China 9.Orchid Conservat & Res Ctr Shenzhen, Shenzhen 518114, Peoples R China 10.[Tsai, Wen-Chieh
推荐引用方式 GB/T 7714	Niu, Shan-Ce,Xu, Qing,Zhang, Guo-Qiang,et al. De novo transcriptome assembly databases for the butterfly orchid Phalaenopsis equestris[J]. SCIENTIFIC DATA,2016,3.
APA	Niu, Shan-Ce.,Xu, Qing.,Zhang, Guo-Qiang.,Zhang, Yong-Qiang.,Tsai, Wen-Chieh.,...&Liu, Zhong-Jian.(2016).De novo transcriptome assembly databases for the butterfly orchid Phalaenopsis equestris.SCIENTIFIC DATA,3.
MLA	Niu, Shan-Ce,et al."De novo transcriptome assembly databases for the butterfly orchid Phalaenopsis equestris".SCIENTIFIC DATA 3(2016).