GasHisSDB: A new gastric histopathology image dataset for computer aided diagnosis of gastric cancer
Hu, Weiming8; Li C(李晨)8; Li, Xiaoyan2; Rahaman, Md Mamunur7,8; Ma, Jiquan3; Zhang, Yong2; Chen, Haoyuan8; Liu, Wanli8; Sun CH(孙昌浩)4,8; Yao, Yudong5
刊名Computers in Biology and Medicine
2022
卷号142页码:1-9
关键词Gastric histopathology Sub-size image Database Image classification
ISSN号0010-4825
产权排序4
英文摘要

Background and objective: Gastric cancer is the fifth most common cancer globally, and early detection of gastric cancer is essential to save lives. Histopathological examination of gastric cancer is the gold standard for the diagnosis of gastric cancer. However, computer-aided diagnostic techniques are challenging to evaluate due to the scarcity of publicly available gastric histopathology image datasets. Methods: In this paper, a noble publicly available Gastric Histopathology Sub-size Image Database (GasHisSDB) is published to identify classifiers’ performance. Specifically, two types of data are included: normal and abnormal, with a total of 245,196 tissue case images. In order to prove that the methods of different periods in the field of image classification have discrepancies on GasHisSDB, we select a variety of classifiers for evaluation. Seven classical machine learning classifiers, three Convolutional Neural Network classifiers, and a novel transformer-based classifier are selected for testing on image classification tasks. Results: This study performed extensive experiments using traditional machine learning and deep learning methods to prove that the methods of different periods have discrepancies on GasHisSDB. Traditional machine learning achieved the best accuracy rate of 86.08% and a minimum of just 41.12%. The best accuracy of deep learning reached 96.47% and the lowest was 86.21%. Accuracy rates vary significantly across classifiers. Conclusions: To the best of our knowledge, it is the first publicly available gastric cancer histopathology dataset containing a large number of images for weakly supervised learning. We believe that GasHisSDB can attract researchers to explore new algorithms for the automated diagnosis of gastric cancer, which can help physicians and patients in the clinical setting.

资助项目National Natural Science Foundation of China[61 806 047] ; Fundamental Research Funds for the Central Universities[N2019003]
WOS关键词CLASSIFICATION
WOS研究方向Life Sciences & Biomedicine - Other Topics ; Computer Science ; Engineering ; Mathematical & Computational Biology
语种英语
WOS记录号WOS:000747364900001
资助机构National Natural Science Foundation of China (No. 61 806 047) ; Fundamental Research Funds for the Central Universities (No. N2019003)
内容类型期刊论文
源URL[http://ir.sia.cn/handle/173321/30299]  
专题沈阳自动化研究所_光电信息技术研究室
通讯作者Li C(李晨)
作者单位1.Institute of Medical Informatics, University of Luebeck, Luebeck, Germany
2.Department of Pathology, Cancer Hospital, China Medical University, Liaoning Cancer Hospital and Institute, Shenyang 110042, China
3.Department of Computer Science and Technology, Heilongjiang University, Harbin, Heilongjiang 150080, China
4.Shenyang Institute of Automation, Chinese Academy of Sciences, Shenyang 110169, China
5.Department of Electrical and Computer Engineering, Stevens Institute of Technology, Hoboken, NJ 07030, United States
6.Department of Radiology, Shengjing Hospital, China Medical University, Shenyang 110122, China
7.School of Computer Science and Engineering, University of New South Wales, Sydney, NSW 2052, Australia
8.Microscopic Image and Medical Image Analysis Group, College of Medicine and Biological Information Engineering, Northeastern University, Shenyang 110169, China
推荐引用方式
GB/T 7714
Hu, Weiming,Li C,Li, Xiaoyan,et al. GasHisSDB: A new gastric histopathology image dataset for computer aided diagnosis of gastric cancer[J]. Computers in Biology and Medicine,2022,142:1-9.
APA Hu, Weiming.,Li C.,Li, Xiaoyan.,Rahaman, Md Mamunur.,Ma, Jiquan.,...&Grzegorzek, Marcin.(2022).GasHisSDB: A new gastric histopathology image dataset for computer aided diagnosis of gastric cancer.Computers in Biology and Medicine,142,1-9.
MLA Hu, Weiming,et al."GasHisSDB: A new gastric histopathology image dataset for computer aided diagnosis of gastric cancer".Computers in Biology and Medicine 142(2022):1-9.
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