Grape-RNA: A Database for the Collection, Evaluation, Treatment, and Data Sharing of Grape RNA-Seq Datasets | |
Wang, Yi2,3; Zhang, Rui1; Liang, Zhenchang2,5; Li, Shaohua2,3 | |
刊名 | GENES |
2020 | |
卷号 | 11期号:3 |
关键词 | Grape-RNA RNA-seq database web tools |
DOI | 10.3390/genes11030315 |
文献子类 | Article |
英文摘要 | Since its inception, RNA sequencing (RNA-seq) has become the most effective way to study gene expression. After more than a decade of development, numerous RNA-seq datasets have been created, and the full utilization of these datasets has emerged as a major issue. In this study, we built a comprehensive database named Grape-RNA, which is focused on the collection, evaluation, treatment, and data sharing of grape RNA-seq datasets. This database contains 1529 RNA-seq samples, 112 microRNA samples from the public platform, and 485 RNA-seq in-house datasets sequenced by our lab. We classified these data into 25 conditions and provide the sample information, cleaned raw data, expression level, assembled unigenes, useful tools, and other relevant information to the users. Thus, this study provides data and tools that should be beneficial for researchers by allowing them to easily use the RNA-seq. The provided information can greatly contribute to grape breeding and genomic and biological research. This study may improve the usage of RNA-seq. |
学科主题 | Genetics & Heredity |
电子版国际标准刊号 | 2073-4425 |
出版地 | BASEL |
WOS关键词 | EXPRESSION ; SEQUENCE ; VISUALIZATION ; RESOURCE ; TOMATO ; GENES |
WOS研究方向 | Genetics & Heredity |
语种 | 英语 |
出版者 | MDPI |
WOS记录号 | WOS:000529189000079 |
资助机构 | National Key Research and Development Program of China [2018YFD1000105, 2018YFD1000300] ; Biodiversity Survey and Assessment Project of the Ministry of Ecology and Environment, China [2019HJ2096001006] ; National Science Foundation of ChinaNational Natural Science Foundation of China (NSFC) [31772266] ; Agricultural Breeding Project of Ningxia Hui Autonomous Region [NXNYYZ20150203] |
内容类型 | 期刊论文 |
源URL | [http://ir.ibcas.ac.cn/handle/2S10CLM1/21784] |
专题 | 中科院北方资源植物重点实验室 |
作者单位 | 1.Univ Chinese Acad Sci, Beijing 100049, Peoples R China 2.Chinese Acad Sci, Innovat Acad Seed Design, Inst Bot, Beijing Key Lab Grape Sci & Enol, Beijing 100093, Peoples R China 3.Chinese Acad Sci, Innovat Acad Seed Design, Inst Bot, CAS Key Lab Plant Resources, Beijing 100093, Peoples R China 4.Chinese Acad Sci, Sino Africa Joint Res Ctr, Wuhan 430074, Peoples R China 5.Shandong Agr Univ, Coll Plant Protect, Tai An 271018, Shandong, Peoples R China |
推荐引用方式 GB/T 7714 | Wang, Yi,Zhang, Rui,Liang, Zhenchang,et al. Grape-RNA: A Database for the Collection, Evaluation, Treatment, and Data Sharing of Grape RNA-Seq Datasets[J]. GENES,2020,11(3). |
APA | Wang, Yi,Zhang, Rui,Liang, Zhenchang,&Li, Shaohua.(2020).Grape-RNA: A Database for the Collection, Evaluation, Treatment, and Data Sharing of Grape RNA-Seq Datasets.GENES,11(3). |
MLA | Wang, Yi,et al."Grape-RNA: A Database for the Collection, Evaluation, Treatment, and Data Sharing of Grape RNA-Seq Datasets".GENES 11.3(2020). |
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