Leveraging plastomes for comparative analysis and phylogenomic inference within Scutellarioideae (Lamiaceae)

doi:10.1371/journal.pone.0232602

CORC > 植物研究所 > 中国科学院植物研究所 > 系统与进化植物学国家重点实验室

	Leveraging plastomes for comparative analysis and phylogenomic inference within Scutellarioideae (Lamiaceae)
	Zhao, Fei 7; Li, Bo 8; Drew, Bryan T.; Chen, Ya-Ping ; Wang, Qiang 5; Yu, Wen-Bin ; Liu, En-De ; Salmaki, Yasaman 1,3; Peng, Hua ; Xiang, Chun-Lei
刊名	PLOS ONE
	2020
卷号	15 期号:5
ISSN号	1932-6203
DOI	10.1371/journal.pone.0232602
文献子类	Article
英文摘要	Scutellaria, or skullcaps, are medicinally important herbs in China, India, Japan, and elsewhere. Though Scutellaria is the second largest and one of the more taxonomically challenging genera within Lamiaceae, few molecular systematic studies have been undertaken within the genus; in part due to a paucity of available informative markers. The lack of informative molecular markers for Scutellaria hinders our ability to accurately and robustly reconstruct phylogenetic relationships, which hampers our understanding of the diversity, phylogeny, and evolutionary history of this cosmopolitan genus. Comparative analyses of 15 plastomes, representing 14 species of subfamily Scutellarioideae, indicate that plastomes within Scutellarioideae contain about 151,000 nucleotides, and possess a typical quadripartite structure. In total, 590 simple sequence repeats, 489 longer repeats, and 16 hyper-variable regions were identified from the 15 plastomes. Phylogenetic relationships among the 14 species representing four of the five genera of Scutellarioideae were resolved with high support values, but the current infrageneric classification of Scutellaria was not supported in all analyses. Complete plastome sequences provide better resolution at an interspecific level than using few to several plastid markers in phylogenetic reconstruction. The data presented here will serve as a foundation to facilitate DNA barcoding, species identification, and systematic research within Scutellaria, which is an important medicinal plant resource worldwide.
学科主题	Multidisciplinary Sciences
出版地	SAN FRANCISCO
WOS关键词	COMPLETE CHLOROPLAST GENOME ; SALVIA LAMIACEAE ; STAMINAL EVOLUTION ; CHARACTER EVOLUTION ; MOLECULAR PHYLOGENY ; GENETIC DIVERSITY ; INVERTED REPEAT ; SEQUENCES ; BIOGEOGRAPHY ; SYSTEMATICS
WOS研究方向	Science & Technology - Other Topics
语种	英语
出版者	PUBLIC LIBRARY SCIENCE
WOS记录号	WOS:000537285700045
资助机构	Ten Thousand Talents Program of Yunnan (Top-notch Young Talents) [YNWR-QNBJ-2018-279] ; CAS Light of West China Program ; Excellent Youth Fund Project of Yunnan Provincial Science and Technology Department [2019FI009] ; National Natural Science Foundation of ChinaNational Natural Science Foundation of China (NSFC) [31870181]
内容类型	期刊论文
源URL	[http://ir.ibcas.ac.cn/handle/2S10CLM1/21741]
专题	系统与进化植物学国家重点实验室
作者单位	1.Chinese Acad Sci, Ctr Integrat Conservat, Xishuangbanna Trop Bot Garden, Mengla, Peoples R China 2.Univ Tehran, Coll Sci, Sch Biol, Dept Plant Sci, Tehran, Iran 3.Univ Tehran, Coll Sci, Sch Biol, Ctr Excellence Phylogeny Living Organisms, Tehran, Iran 4.Chinese Acad Sci, Inst Bot, State Key Lab Systemat & Evolutionary Bot, Beijing, Peoples R China 5.Drew, Bryan T.] Univ Nebraska Kearney, Dept Biol, Kearney, NE USA 6.Jiangxi Agr Univ, Coll Agron, Res Ctr Ecol Sci, Nanchang, Jiangxi, Peoples R China 7.Chinese Acad Sci, Kunming Inst Bot, CAS Key Lab Plant Divers & Biogeog East Asia, Kunming, Yunnan, Peoples R China 8.Univ Chinese Acad Sci, Beijing, Peoples R China
推荐引用方式 GB/T 7714	Zhao, Fei,Li, Bo,Drew, Bryan T.,et al. Leveraging plastomes for comparative analysis and phylogenomic inference within Scutellarioideae (Lamiaceae)[J]. PLOS ONE,2020,15(5).
APA	Zhao, Fei.,Li, Bo.,Drew, Bryan T..,Chen, Ya-Ping.,Wang, Qiang.,...&Xiang, Chun-Lei.(2020).Leveraging plastomes for comparative analysis and phylogenomic inference within Scutellarioideae (Lamiaceae).PLOS ONE,15(5).
MLA	Zhao, Fei,et al."Leveraging plastomes for comparative analysis and phylogenomic inference within Scutellarioideae (Lamiaceae)".PLOS ONE 15.5(2020).