Comparative transcriptome analysis of four co-occurring Ulva species for understanding the dominance of Ulva prolifera in the Yellow Sea green tides

doi:10.1007/s10811-019-01810-z

CORC > 海洋研究所 > 中国科学院海洋研究所 > 海洋生态与环境科学重点实验室

	Comparative transcriptome analysis of four co-occurring Ulva species for understanding the dominance of Ulva prolifera in the Yellow Sea green tides
	Wang, Yu 4,5; Liu, Feng 2,3,4; Liu, Xingfeng 4,5; Shi, Shitao 4,5; Bi, Yuping 1,5; Moejes, Fiona Wanjiku 6
刊名	JOURNAL OF APPLIED PHYCOLOGY
	2019-10-01
卷号	31 期号:5 页码:3303-3316
关键词	Transcriptome Ulva prolifera Chlorophyta Green tide Yellow Sea Bloom
ISSN号	0921-8971
DOI	10.1007/s10811-019-01810-z
通讯作者	Liu, Feng(liufeng@qdio.ac.cn) ; Bi, Yuping(yupingbi@vip.sina.com)
英文摘要	The last 12 years has seen the dominance of Ulva prolifera in the green tides occurring in the Yellow Sea. To gain a better understanding of the underlying molecular clues associated with the dominance pattern of the Yellow Sea green tides, we generated and compared the transcriptomes of four co-occurring Ulva species including U. prolifera, U. linza, U. flexuosa, and U. compressa under the same conditions. Our results revealed that the transcriptomes of four Ulva species shared a set of core genes, but varied in construction of GO term categories, transcription factor (TF) styles, and metabolism pathways. Based on the KEGG database, several growth-related genes including pyruvate kinase (PK) and nitrate transporter (NRT) have been identified to be enriched in U. prolifera compared with the other three Ulva species. This study provides novel transcriptionomic data for us to understand the species dominance pattern in the Yellow Sea green tides.
资助项目	Strategic Priority Research Program of the Chinese Academy of Sciences[XDA23050302] ; Strategic Priority Research Program of the Chinese Academy of Sciences[XDA23050403] ; Scientific and Technological Innovation Project - Pilot National Laboratory for Marine Science and Technology (Qingdao)[2016ASKJ02] ; Key Research Program of Frontier Sciences, Chinese Academy of Sciences[QYZDB-SSW-DQC023] ; National Natural Science Foundation of China[41876165] ; Marine S&T Fund of Shandong Province for Pilot National Laboratory for Marine Science and Technology (Qingdao)[2018SDKJ0504] ; Youth Innovation Promotion Association, Chinese Academy of Sciences[2015164] ; Open Research Fund of Key Laboratory of Integrated Marine Monitoring and Applied Technologies for Harmful Algal Blooms, S.O.A.[MATHAB201701] ; earmarked fund for Modern Agro-industry Technology Research System in Shandong Province of China[SDAIT-26-09]
WOS研究方向	Biotechnology & Applied Microbiology ; Marine & Freshwater Biology
语种	英语
出版者	SPRINGER
WOS记录号	WOS:000493895800048
内容类型	期刊论文
源URL	[http://ir.qdio.ac.cn/handle/337002/165037]
专题	海洋研究所_海洋生态与环境科学重点实验室
通讯作者	Liu, Feng; Bi, Yuping
作者单位	1.Shandong Acad Agr Sci, Biotechnol Res Ctr, Jinan 250100, Shandong, Peoples R China 2.Chinese Acad Sci, Ctr Ocean Megasci, Qingdao 266400, Shandong, Peoples R China 3.Pilot Natl Lab Marine Sci & Technol Qingdao, Marine Ecol & Environm Sci Lab, Qingdao 266237, Shandong, Peoples R China 4.Chinese Acad Sci, Inst Oceanol, CAS Key Lab Marine Ecol & Environm Sci, Qingdao 266071, Shandong, Peoples R China 5.Shandong Univ, Sch Life Sci, Jinan 250100, Shandong, Peoples R China 6.Bantry Marine Res Stn Ltd, Bantry P75 AX07, Cork, Ireland
推荐引用方式 GB/T 7714	Wang, Yu,Liu, Feng,Liu, Xingfeng,et al. Comparative transcriptome analysis of four co-occurring Ulva species for understanding the dominance of Ulva prolifera in the Yellow Sea green tides[J]. JOURNAL OF APPLIED PHYCOLOGY,2019,31(5):3303-3316.
APA	Wang, Yu,Liu, Feng,Liu, Xingfeng,Shi, Shitao,Bi, Yuping,&Moejes, Fiona Wanjiku.(2019).Comparative transcriptome analysis of four co-occurring Ulva species for understanding the dominance of Ulva prolifera in the Yellow Sea green tides.JOURNAL OF APPLIED PHYCOLOGY,31(5),3303-3316.
MLA	Wang, Yu,et al."Comparative transcriptome analysis of four co-occurring Ulva species for understanding the dominance of Ulva prolifera in the Yellow Sea green tides".JOURNAL OF APPLIED PHYCOLOGY 31.5(2019):3303-3316.