Fourteen isolated drowned reefs have been identified around the Xisha Uplift by multibeam and seismic data. The drowning processes of these reefs can be divided into three different stages, which correspond to three different accelerated tectonic subsidence periods. The drowning of the Xisha reefs is the result of the combined action of tectonic subsidence and sea level fluctuations, and the tectonic subsidence rate had to remain above 0.2 mm yr(-1) for a long time. Three abrupt accelerated tectonic subsidence events that occurred in the late Miocene, Pliocene and early Quaternary in the Xisha Uplift were closely related to the thermal subsidence processes after three stages of post-rifting magmatism. The magmatism of the middle Miocene and the following thermal subsidence resulted in the drowning of reefs in the northwestern Xisha uplift (Zone A). During the early Pliocene, massive magmatic intrusions and volcanic eruptions occurred in the Xisha Uplift. Then, the subsequent thermal subsidence started the drowning process of reefs in the northeastern and western regions of the Xisha Uplift (Zone B and C). During the early Quaternary, large-scale magmatism also occurred in the Xisha Uplift. The subsequent thermal subsidence resulted in a new rapid tectonic subsidence, which caused the reefs in the southern and southeastern regions of the Xisha Uplift to drown (Zone D and E).