Deep Circular RNA Sequencing Provides Insights into the Mechanism Underlying Grass Carp Reovirus Infection
He, Libo1; Zhang, Aidi1; Xiong, Lv1,2; Li, Yongming1; Huang, Rong1; Liao, Lanjie1; Zhu, Zuoyan1; Wang, Yaping1
刊名INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
2017-09-01
卷号18期号:9页码:16
关键词grass carp grass carp reovirus circRNA differential expression paternal gene binding miRNA blood coagulation hemorrhagic symptoms mRNA-miRNA-circRNA network
ISSN号1422-0067
DOI10.3390/ijms18091977
英文摘要

Grass carp hemorrhagic disease, caused by the grass carp reovirus (GCRV), is a major disease that hampers the development of grass carp aquaculture in China. The mechanism underlying GCRV infection is still largely unknown. Circular RNAs (circRNAs) are important regulators involved in various biological processes. In the present study, grass carp were infected with GCRV, and spleen samples were collected at 0 (control), 1, 3, 5, and 7 days post-infection (dpi). Samples were used to construct and sequence circRNA libraries, and a total of 5052 circRNAs were identified before and after GCRV infection, of which 41 exhibited differential expression compared with controls. Many parental genes of the differentially expressed circRNAs are involved in metal ion binding, protein ubiquitination, enzyme activity, and nucleotide binding. Moreover, 72 binding miRNAs were predicted from the differentially expressed circRNAs, of which eight targeted genes were predicted to be involved in immune responses, blood coagulation, hemostasis, and complement and coagulation cascades. Upregulation of these genes may lead to endothelial and blood cell damage and hemorrhagic symptoms. Our results indicate that an mRNA-miRNA-circRNA network may be present in grass carp infected with GCRV, providing new insight into the mechanism underlying grass carp reovirus infection.

资助项目Strategic Priority Research Program of the Chinese Academy of Sciences[XDA08030203] ; Open Project of State Key Laboratory of Freshwater Ecology and Biotechnology[2017FB12] ; Knowledge Innovation Program of Institute of Hydrobiology, Chinese Academy of Sciences[Y65E021301]
WOS关键词PROKARYOTIC EXPRESSION ; GENE ; GCRV ; HOMEOSTASIS ; GENOTYPES ; ABUNDANT ; SPONGES ; PROTEIN ; PROFILE ; GENOME
WOS研究方向Biochemistry & Molecular Biology ; Chemistry
语种英语
出版者MDPI AG
WOS记录号WOS:000411963800156
资助机构Strategic Priority Research Program of the Chinese Academy of Sciences ; Strategic Priority Research Program of the Chinese Academy of Sciences ; Strategic Priority Research Program of the Chinese Academy of Sciences ; Strategic Priority Research Program of the Chinese Academy of Sciences ; Strategic Priority Research Program of the Chinese Academy of Sciences ; Strategic Priority Research Program of the Chinese Academy of Sciences ; Strategic Priority Research Program of the Chinese Academy of Sciences ; Strategic Priority Research Program of the Chinese Academy of Sciences ; Open Project of State Key Laboratory of Freshwater Ecology and Biotechnology ; Open Project of State Key Laboratory of Freshwater Ecology and Biotechnology ; Open Project of State Key Laboratory of Freshwater Ecology and Biotechnology ; Open Project of State Key Laboratory of Freshwater Ecology and Biotechnology ; Open Project of State Key Laboratory of Freshwater Ecology and Biotechnology ; Open Project of State Key Laboratory of Freshwater Ecology and Biotechnology ; Open Project of State Key Laboratory of Freshwater Ecology and Biotechnology ; Open Project of State Key Laboratory of Freshwater Ecology and Biotechnology ; Knowledge Innovation Program of Institute of Hydrobiology, Chinese Academy of Sciences ; Knowledge Innovation Program of Institute of Hydrobiology, Chinese Academy of Sciences ; Knowledge Innovation Program of Institute of Hydrobiology, Chinese Academy of Sciences ; Knowledge Innovation Program of Institute of Hydrobiology, Chinese Academy of Sciences ; Knowledge Innovation Program of Institute of Hydrobiology, Chinese Academy of Sciences ; Knowledge Innovation Program of Institute of Hydrobiology, Chinese Academy of Sciences ; Knowledge Innovation Program of Institute of Hydrobiology, Chinese Academy of Sciences ; Knowledge Innovation Program of Institute of Hydrobiology, Chinese Academy of Sciences ; Strategic Priority Research Program of the Chinese Academy of Sciences ; Strategic Priority Research Program of the Chinese Academy of Sciences ; 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Strategic Priority Research Program of the Chinese Academy of Sciences ; Strategic Priority Research Program of the Chinese Academy of Sciences ; Strategic Priority Research Program of the Chinese Academy of Sciences ; Strategic Priority Research Program of the Chinese Academy of Sciences ; Open Project of State Key Laboratory of Freshwater Ecology and Biotechnology ; Open Project of State Key Laboratory of Freshwater Ecology and Biotechnology ; Open Project of State Key Laboratory of Freshwater Ecology and Biotechnology ; Open Project of State Key Laboratory of Freshwater Ecology and Biotechnology ; Open Project of State Key Laboratory of Freshwater Ecology and Biotechnology ; Open Project of State Key Laboratory of Freshwater Ecology and Biotechnology ; Open Project of State Key Laboratory of Freshwater Ecology and Biotechnology ; Open Project of State Key Laboratory of Freshwater Ecology and Biotechnology ; Knowledge Innovation Program of Institute of Hydrobiology, Chinese Academy of Sciences ; 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Open Project of State Key Laboratory of Freshwater Ecology and Biotechnology ; Open Project of State Key Laboratory of Freshwater Ecology and Biotechnology ; Open Project of State Key Laboratory of Freshwater Ecology and Biotechnology ; Open Project of State Key Laboratory of Freshwater Ecology and Biotechnology ; Open Project of State Key Laboratory of Freshwater Ecology and Biotechnology ; Open Project of State Key Laboratory of Freshwater Ecology and Biotechnology ; Open Project of State Key Laboratory of Freshwater Ecology and Biotechnology ; Open Project of State Key Laboratory of Freshwater Ecology and Biotechnology ; Knowledge Innovation Program of Institute of Hydrobiology, Chinese Academy of Sciences ; Knowledge Innovation Program of Institute of Hydrobiology, Chinese Academy of Sciences ; Knowledge Innovation Program of Institute of Hydrobiology, Chinese Academy of Sciences ; Knowledge Innovation Program of Institute of Hydrobiology, Chinese Academy of Sciences ; Knowledge Innovation Program of Institute of Hydrobiology, Chinese Academy of Sciences ; 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Knowledge Innovation Program of Institute of Hydrobiology, Chinese Academy of Sciences ; Knowledge Innovation Program of Institute of Hydrobiology, Chinese Academy of Sciences ; Strategic Priority Research Program of the Chinese Academy of Sciences ; Strategic Priority Research Program of the Chinese Academy of Sciences ; Strategic Priority Research Program of the Chinese Academy of Sciences ; Strategic Priority Research Program of the Chinese Academy of Sciences ; Strategic Priority Research Program of the Chinese Academy of Sciences ; Strategic Priority Research Program of the Chinese Academy of Sciences ; Strategic Priority Research Program of the Chinese Academy of Sciences ; Strategic Priority Research Program of the Chinese Academy of Sciences ; Open Project of State Key Laboratory of Freshwater Ecology and Biotechnology ; Open Project of State Key Laboratory of Freshwater Ecology and Biotechnology ; Open Project of State Key Laboratory of Freshwater Ecology and Biotechnology ; Open Project of State Key Laboratory of Freshwater Ecology and Biotechnology ; Open Project of State Key Laboratory of Freshwater Ecology and Biotechnology ; Open Project of State Key Laboratory of Freshwater Ecology and Biotechnology ; Open Project of State Key Laboratory of Freshwater Ecology and Biotechnology ; Open Project of State Key Laboratory of Freshwater Ecology and Biotechnology ; Knowledge Innovation Program of Institute of Hydrobiology, Chinese Academy of Sciences ; Knowledge Innovation Program of Institute of Hydrobiology, Chinese Academy of Sciences ; Knowledge Innovation Program of Institute of Hydrobiology, Chinese Academy of Sciences ; Knowledge Innovation Program of Institute of Hydrobiology, Chinese Academy of Sciences ; Knowledge Innovation Program of Institute of Hydrobiology, Chinese Academy of Sciences ; Knowledge Innovation Program of Institute of Hydrobiology, Chinese Academy of Sciences ; Knowledge Innovation Program of Institute of Hydrobiology, Chinese Academy of Sciences ; Knowledge Innovation Program of Institute of Hydrobiology, Chinese Academy of Sciences ; Strategic Priority Research Program of the Chinese Academy of Sciences ; Strategic Priority Research Program of the Chinese Academy of Sciences ; Strategic Priority Research Program of the Chinese Academy of Sciences ; Strategic Priority Research Program of the Chinese Academy of Sciences ; Strategic Priority Research Program of the Chinese Academy of Sciences ; Strategic Priority Research Program of the Chinese Academy of Sciences ; Strategic Priority Research Program of the Chinese Academy of Sciences ; Strategic Priority Research Program of the Chinese Academy of Sciences ; Open Project of State Key Laboratory of Freshwater Ecology and Biotechnology ; Open Project of State Key Laboratory of Freshwater Ecology and Biotechnology ; Open Project of State Key Laboratory of Freshwater Ecology and Biotechnology ; Open Project of State Key Laboratory of Freshwater Ecology and Biotechnology ; Open Project of State Key Laboratory of Freshwater Ecology and Biotechnology ; Open Project of State Key Laboratory of Freshwater Ecology and Biotechnology ; Open Project of State Key Laboratory of Freshwater Ecology and Biotechnology ; Open Project of State Key Laboratory of Freshwater Ecology and Biotechnology ; Knowledge Innovation Program of Institute of Hydrobiology, Chinese Academy of Sciences ; Knowledge Innovation Program of Institute of Hydrobiology, Chinese Academy of Sciences ; Knowledge Innovation Program of Institute of Hydrobiology, Chinese Academy of Sciences ; Knowledge Innovation Program of Institute of Hydrobiology, Chinese Academy of Sciences ; Knowledge Innovation Program of Institute of Hydrobiology, Chinese Academy of Sciences ; Knowledge Innovation Program of Institute of Hydrobiology, Chinese Academy of Sciences ; Knowledge Innovation Program of Institute of Hydrobiology, Chinese Academy of Sciences ; Knowledge Innovation Program of Institute of Hydrobiology, Chinese Academy of Sciences
内容类型期刊论文
源URL[http://ir.ihb.ac.cn/handle/342005/32701]  
专题水生生物研究所_鱼类生物学及渔业生物技术研究中心_期刊论文
通讯作者Wang, Yaping
作者单位1.Chinese Acad Sci, Inst Hydrobiol, State Key Lab Freshwater Ecol & Biotechnol, Wuhan 430072, Hubei, Peoples R China
2.Univ Chinese Acad Sci, Beijing 100049, Peoples R China
推荐引用方式
GB/T 7714
He, Libo,Zhang, Aidi,Xiong, Lv,et al. Deep Circular RNA Sequencing Provides Insights into the Mechanism Underlying Grass Carp Reovirus Infection[J]. INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES,2017,18(9):16.
APA He, Libo.,Zhang, Aidi.,Xiong, Lv.,Li, Yongming.,Huang, Rong.,...&Wang, Yaping.(2017).Deep Circular RNA Sequencing Provides Insights into the Mechanism Underlying Grass Carp Reovirus Infection.INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES,18(9),16.
MLA He, Libo,et al."Deep Circular RNA Sequencing Provides Insights into the Mechanism Underlying Grass Carp Reovirus Infection".INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES 18.9(2017):16.
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