The complete mitochondrial genome of Cymothoa indica has a highly rearranged gene order and clusters at the very base of the Isopoda clade | |
Zou, Hong1,2; Jakovlic, Ivan3; Zhang, Dong1,2,4; Chen, Rong3; Mahboob, Shahid5,6; Al-Ghanim, Khalid Abdullah5; Al-Misned, Fahad5; Li, Wen-Xiang1,2; Wang, Gui-Tang1,2 | |
刊名 | PLOS ONE |
2018-09-04 | |
卷号 | 13期号:9页码:16 |
ISSN号 | 1932-6203 |
DOI | 10.1371/journal.pone.0203089 |
英文摘要 | As a result of great diversity in life histories and a large number of described species, taxonomic and phylogenetic uncertainty permeates the entire crustacean order of Isopoda. Large molecular datasets capable of providing sufficiently high phylogenetic resolution, such as mitochondrial genomes (mitogenomes), are needed to infer their evolutionary history with confidence, but isopod mitogenomes remain remarkably poorly represented in public databases. We sequenced the complete mitogenome of Cymothoa indica, a species belonging to a family from which no mitochondrial genome was sequenced yet, Cymothoidae. The mitogenome (circular, 14484 bp, A+T = 63.8%) is highly compact, appears to be missing two tRNA genes (trnI and trnE), and exhibits a unique gene order with a large number of rearrangements. High compactness and the existence of palindromes indicate that the mechanism behind these rearrangements might be associated with linearization events in its evolutionary history, similar to those proposed for isopods from the Armadillidium genus (Oniscidea). Isopods might present an important model system to study the proposed discontinuity in the dynamics of mitochondrial genomic architecture evolution. Phylogenetic analyses (Bayesian Inference and Maximum Likelihood) conducted using nucleotide sequences of all mitochondrial genes resolved Oniscidea and Cymothoida suborders as paraphyletic. Cymothoa indica was resolved as a sister group (basal) to all remaining isopods, which challenges the accepted isopod phylogeny, where Cymothoida are the most derived, and Phreatoicidea the most basal isopod group. There is growing evidence that Cymothoida suborder might be split into two evolutionary distant clades, with parasitic species being the most basal split in the Isopoda clade, but a much larger amount of molecular resources carrying a high phylogenetic resolution will be needed to infer the remarkably complex evolutionary history of this group of animals with confidence. |
资助项目 | Earmarked Fund for China Agriculture Research System[CARS-45-15] ; National Natural Science Foundation of China[31572658] ; Major Scientific and Technological Innovation Project of Hubei Province[2015ABA045] ; Deanship of Scientific Research at King Saud University[1435-012] |
WOS关键词 | TRANSFER-RNA GENES ; TERRESTRIAL ISOPODS ; CRUSTACEA ISOPODA ; DEEP-SEA ; ARMADILLIDIUM-VULGARE ; PHYLOGENETIC ANALYSIS ; NUCLEOTIDE-SEQUENCES ; INVERTED REPEATS ; EVOLUTION ; PERACARIDA |
WOS研究方向 | Science & Technology - Other Topics |
语种 | 英语 |
出版者 | PUBLIC LIBRARY SCIENCE |
WOS记录号 | WOS:000444222400027 |
资助机构 | Earmarked Fund for China Agriculture Research System ; Earmarked Fund for China Agriculture Research System ; Earmarked Fund for China Agriculture Research System ; Earmarked Fund for China Agriculture Research System ; Earmarked Fund for China Agriculture Research System ; Earmarked Fund for China Agriculture Research System ; Earmarked Fund for China Agriculture Research System ; Earmarked Fund for China Agriculture Research System ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; Major Scientific and Technological Innovation Project of Hubei Province ; Major Scientific and Technological Innovation Project of Hubei Province ; Major Scientific and Technological Innovation Project of Hubei Province ; Major Scientific and Technological Innovation Project of Hubei Province ; Major Scientific and Technological Innovation Project of Hubei Province ; Major Scientific and Technological Innovation Project of Hubei Province ; Major Scientific and Technological Innovation Project of Hubei Province ; Major Scientific and Technological Innovation Project of Hubei Province ; Deanship of Scientific Research at King Saud University ; Deanship of Scientific Research at King Saud University ; Deanship of Scientific Research at King Saud University ; Deanship of Scientific Research at King Saud University ; Deanship of Scientific Research at King Saud University ; Deanship of Scientific Research at King Saud University ; Deanship of Scientific Research at King Saud University ; Deanship of Scientific Research at King Saud University ; Earmarked Fund for China Agriculture Research System ; Earmarked Fund for China Agriculture Research System ; Earmarked Fund for China Agriculture Research System ; Earmarked Fund for China Agriculture Research System ; 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内容类型 | 期刊论文 |
源URL | [http://ir.ihb.ac.cn/handle/342005/29370] |
专题 | 水生生物研究所_鱼类生物学及渔业生物技术研究中心_期刊论文 |
通讯作者 | Wang, Gui-Tang |
作者单位 | 1.Chinese Acad Sci, Key Lab Aquaculture Dis Control, Minist Agr, Inst Hydrobiol, Wuhan, Hubei, Peoples R China 2.Chinese Acad Sci, State Key Lab Freshwater Ecol & Biotechnol, Inst Hydrobiol, Wuhan, Hubei, Peoples R China 3.Biotransduct Lab, Wuhan, Hubei, Peoples R China 4.Univ Chinese Acad Sci, Beijing, Peoples R China 5.King Saud Univ, Dept Zool, Coll Sci, Riyadh, Saudi Arabia 6.GC Univ, Dept Zool, Faisalabad, Pakistan |
推荐引用方式 GB/T 7714 | Zou, Hong,Jakovlic, Ivan,Zhang, Dong,et al. The complete mitochondrial genome of Cymothoa indica has a highly rearranged gene order and clusters at the very base of the Isopoda clade[J]. PLOS ONE,2018,13(9):16. |
APA | Zou, Hong.,Jakovlic, Ivan.,Zhang, Dong.,Chen, Rong.,Mahboob, Shahid.,...&Wang, Gui-Tang.(2018).The complete mitochondrial genome of Cymothoa indica has a highly rearranged gene order and clusters at the very base of the Isopoda clade.PLOS ONE,13(9),16. |
MLA | Zou, Hong,et al."The complete mitochondrial genome of Cymothoa indica has a highly rearranged gene order and clusters at the very base of the Isopoda clade".PLOS ONE 13.9(2018):16. |
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