Plastome phylogenomics of the early-diverging eudicot family Berberidaceae

doi:10.1016/j.ympev.2018.07.021

CORC > 武汉植物园 > 中国科学院武汉植物园

	Plastome phylogenomics of the early-diverging eudicot family Berberidaceae
	Wang, Hengchang 5; Sun, Hang 2; Tojibaev, Komiljon Sh 1; Zhang, Shoujun 5; Meng, Aiping 5; Zhang, Jianwen 2; Deng, Tao 2; Chen, Li 5; Lin, Nan 5; Landis, Jacob B.3
刊名	MOLECULAR PHYLOGENETICS AND EVOLUTION
	2018-11-01
卷号	128 页码:203-211
关键词	Berberidaceae Plastome Phylogenomic analyses Pseudogene Inversion
ISSN号	1055-7903
DOI	10.1016/j.ympev.2018.07.021
英文摘要	The relationships among the genera of the early-diverging eudicot family Berberidaceae have long been controversial. To resolve these relationships and to better understand plastome evolution within the family, we sequenced the complete plastome sequences of ten Berberidaceae genera, combined these with six existing plastomes for the family, and conducted a series of phylogenomic analyses on the resulting data set. Five of the newly sequenced plastomes were found to possess the typical angiosperm plastome complement of 79 protein-coding genes, 4 rRNA genes, and 30 tRNA genes. The infA gene was found to be pseudogenized in Bongardia, Diphylleia, Dysosma and Vancouveria; rps7 was found to be severely truncated in Diphylleia, Dysosma and Podophyllum; clpP was found to be highly divergent in Vancouveria; and a similar to 19 kb inversion was detected in Bongardia. Maximum likelihood phylogenetic analyses of a 79-gene, 24-taxon data set including nearly all genera of Berberidaceae recovered four chromosome groups (x = 6, 7, 8, 10), resolved the x = 8 group as the sister to the x = 10 group, and supported the monophyly of the Glade comprising x = 7, 8, 10. The generic relationships within each group were all resolved with high support. Based on gene presence within the Inverted Repeat (IR), a total of seven plastome IR types were identified within Berberidaceae. Biogeographical analysis indicated the origin and diversification of Berberidaceae has likely been strongly influenced by the distribution of its favored habitat: temperate forests.
资助项目	National Natural Science Foundation of China[31600176] ; National Natural Science Foundation of China[31590823] ; Programme Foundation for the Backbone of Scientific Research by Wuhan Botanical Garden, Chinese Academy of Sciences[Y855241G01] ; National Key R and D Program of China[2017YFC0505200]
WOS研究方向	Biochemistry & Molecular Biology ; Evolutionary Biology ; Genetics & Heredity
语种	英语
出版者	ACADEMIC PRESS INC ELSEVIER SCIENCE
WOS记录号	WOS:000446022200016
内容类型	期刊论文
源URL	[http://202.127.146.157/handle/2RYDP1HH/6023]
专题	中国科学院武汉植物园
通讯作者	Wang, Hengchang; Sun, Hang
作者单位	1.Acad Sci Uzbek, Inst Bot, Cent Herbarium Uzbekistan, Tashkent, Uzbekistan 2.Chinese Acad Sci, Kunming Inst Bot, Key Lab Plant Divers & Biogeog East Asia, Kunming, Yunnan, Peoples R China 3.Univ Calif Riverside, Dept Bot & Plant Sci, Riverside, CA 92521 USA 4.Oberlin Coll, Dept Biol, Oberlin, OH 44074 USA 5.Chinese Acad Sci, Wuhan Bot Garden, Key Lab Plant Germplasm Enhancement & Specialty A, Wuhan, Hubei, Peoples R China
推荐引用方式 GB/T 7714	Wang, Hengchang,Sun, Hang,Tojibaev, Komiljon Sh,et al. Plastome phylogenomics of the early-diverging eudicot family Berberidaceae[J]. MOLECULAR PHYLOGENETICS AND EVOLUTION,2018,128:203-211.
APA	Wang, Hengchang.,Sun, Hang.,Tojibaev, Komiljon Sh.,Zhang, Shoujun.,Meng, Aiping.,...&Sun, Yanxia.(2018).Plastome phylogenomics of the early-diverging eudicot family Berberidaceae.MOLECULAR PHYLOGENETICS AND EVOLUTION,128,203-211.
MLA	Wang, Hengchang,et al."Plastome phylogenomics of the early-diverging eudicot family Berberidaceae".MOLECULAR PHYLOGENETICS AND EVOLUTION 128(2018):203-211.