The first complete plastome sequence of the basal asterid family Styracaceae (Ericales) reveals a large inversion

doi:10.1007/s00606-016-1352-0

CORC > 武汉植物园 > 中国科学院武汉植物园

	The first complete plastome sequence of the basal asterid family Styracaceae (Ericales) reveals a large inversion
	Yan, Minghui 1,3; Moore, Michael J.2; Meng, Aiping 1; Yao, Xiaohong 1; Wang, Hengchang 1
刊名	PLANT SYSTEMATICS AND EVOLUTION
	2017
卷号	303 期号:1 页码:61-70
关键词	Alniphyllum eberhardtii Ericales Inversion Phylogenomics Plastome Styracaceae
ISSN号	0378-2697
DOI	10.1007/s00606-016-1352-0
英文摘要	Plastome sequences are rich sources of information for resolving difficult phylogenetic relationships and provide genomic data for conservation studies. Here, the complete plastome sequence of Alniphyllum eberhardtii Guillaumin is reported, representing the first plastome of the basal asterid family Styracaceae (Ericales). The plastome is 155,384 bp in length and contains 79 protein-coding genes, 30 tRNA genes and 4 rRNA genes, totaling 113 unique genes with 19 genes in the inverted repeat region. Unusual features of the plastome include the presence a large 20-kb inversion in the Large Single-Copy region, the pseudogenization of the accD gene, and the loss of the second intron from clpP. The 20-kb inversion includes 14 genes and has not been previously reported in other Ericales plastomes. Thirty-nine plastid simple sequence repeats (SSRs) that may provide genetic resources for the conservation of this economically import timber plant are characterized. Phylogenetic results inferred from ML and MP analyses of 66 plastid genes and 26 taxa reveal that the Styracaceae are sister to a clade including Actinidiaceae and Ericaceae and suggest that complete plastomes are likely to be very helpful in resolving the basal relationships among Ericales families, which have resisted resolution in smaller phylogenetic data sets.
资助项目	National Natural Science Foundation of China[31370223] ; National Natural Science Foundation of China[31070191]
WOS研究方向	Plant Sciences ; Evolutionary Biology
语种	英语
出版者	SPRINGER WIEN
WOS记录号	WOS:000393648500006
内容类型	期刊论文
源URL	[http://202.127.146.157/handle/2RYDP1HH/1431]
专题	中国科学院武汉植物园
通讯作者	Wang, Hengchang
作者单位	1.Chinese Acad Sci, Wuhan Bot Garden, Key Lab Plant Germplasm Enhancement & Specialty A, Wuhan, Hubei, Peoples R China 2.Oberlin Coll, Dept Biol, Oberlin, OH 44074 USA 3.Univ Chinese Acad Sci, Beijing, Peoples R China
推荐引用方式 GB/T 7714	Yan, Minghui,Moore, Michael J.,Meng, Aiping,et al. The first complete plastome sequence of the basal asterid family Styracaceae (Ericales) reveals a large inversion[J]. PLANT SYSTEMATICS AND EVOLUTION,2017,303(1):61-70.
APA	Yan, Minghui,Moore, Michael J.,Meng, Aiping,Yao, Xiaohong,&Wang, Hengchang.(2017).The first complete plastome sequence of the basal asterid family Styracaceae (Ericales) reveals a large inversion.PLANT SYSTEMATICS AND EVOLUTION,303(1),61-70.
MLA	Yan, Minghui,et al."The first complete plastome sequence of the basal asterid family Styracaceae (Ericales) reveals a large inversion".PLANT SYSTEMATICS AND EVOLUTION 303.1(2017):61-70.