Phylogeography of Pinus tabulaeformis Carr. (Pinaceae), a dominant species of coniferous forest in northern China

	Phylogeography of Pinus tabulaeformis Carr. (Pinaceae), a dominant species of coniferous forest in northern China
	Chen, Kangming 1,2; Abbott, Richard J.3; Milne, Richard I.4; Tian, Xin-Min 2; Liu, Jianquan 1,2
刊名	molecular ecology
	2008-10-01
卷号	17 期号:19 页码:4276-4288
关键词	cpDNA glacial refugia mtDNA north China phylogeography Pinus tabulaeformis
合作状况	其它
中文摘要	how coniferous trees in northern china changed their distribution ranges in response to quaternary climatic oscillations remains largely unknown. here we report a study of the phylogeography of pinus tabulaeformis, an endemic and dominant species of coniferous forest in northern china. we examined sequence variation of maternally inherited, seed-dispersed mitochondrial dna (mtdna) (nad5 intron 1 and nad4/3-4) and paternally inherited, pollen- and seed-dispersed chloroplast dna (cpdna) (rpl16 and trns-trng) within and among 30 natural populations across the entire range of the species. six mitotypes and five chlorotypes were recovered among 291 trees surveyed. population divergence was high for mtdna variation (g(st) = 0.738, n-st = 0.771) indicating low levels of seed-based gene flow and significant phylogeographical structure (n-st > g(st), p < 0.05). the spatial distribution of mitotypes suggests that five distinct population groups exist in the species: one in the west comprising seven populations, a second with a north-central distribution comprising 15 populations, a third with a southern and easterly distribution comprising five populations, a fourth comprising one central and one western population, and a fifth comprising a single population located in the north-central part of the species' range. each group apart from the fourth group is characterized by a distinct mitotype, with other mitotypes, if present, occurring at low frequency. it is suggested, therefore, that most members of each group apart from group 4 are derived from ancestors that occupied different isolated refugia in a previous period of range fragmentation of the species, possibly at the time of the last glacial maximum. possible locations for these refugia are suggested. a comparison of mitotype diversity between northern and southern subgroups within the north-central group of populations (group 2) showed much greater uniformity in the northern part of the range both within and between populations. this could indicate a northward migration of the species from a southern refugium in this region during the postglacial period, although alternative explanations cannot be ruled out. two chlorotypes were distributed across the geographical range of the species, resulting in lower levels of among-population chlorotype variation. the geographical pattern of variation for all five chlorotypes provided some indication of the species surviving past glaciations in more than one refugium, although differentiation was much less marked, presumably due to the greater dispersal of cpdna via pollen.
英文摘要	how coniferous trees in northern china changed their distribution ranges in response to quaternary climatic oscillations remains largely unknown. here we report a study of the phylogeography of pinus tabulaeformis, an endemic and dominant species of coniferous forest in northern china. we examined sequence variation of maternally inherited, seed-dispersed mitochondrial dna (mtdna) (nad5 intron 1 and nad4/3-4) and paternally inherited, pollen- and seed-dispersed chloroplast dna (cpdna) (rpl16 and trns-trng) within and among 30 natural populations across the entire range of the species. six mitotypes and five chlorotypes were recovered among 291 trees surveyed. population divergence was high for mtdna variation (g(st) = 0.738, n(st) = 0.771) indicating low levels of seed-based gene flow and significant phylogeographical structure (n(st) > g(st), p < 0.05). the spatial distribution of mitotypes suggests that five distinct population groups exist in the species: one in the west comprising seven populations, a second with a north-central distribution comprising 15 populations, a third with a southern and easterly distribution comprising five populations, a fourth comprising one central and one western population, and a fifth comprising a single population located in the north-central part of the species' range. each group apart from the fourth group is characterized by a distinct mitotype, with other mitotypes, if present, occurring at low frequency. it is suggested, therefore, that most members of each group apart from group 4 are derived from ancestors that occupied different isolated refugia in a previous period of range fragmentation of the species, possibly at the time of the last glacial maximum. possible locations for these refugia are suggested. a comparison of mitotype diversity between northern and southern subgroups within the north-central group of populations (group 2) showed much greater uniformity in the northern part of the range both within and between populations. this could indicate a northward migration of the species from a southern refugium in this region during the postglacial period, although alternative explanations cannot be ruled out. two chlorotypes were distributed across the geographical range of the species, resulting in lower levels of among-population chlorotype variation. the geographical pattern of variation for all five chlorotypes provided some indication of the species surviving past glaciations in more than one refugium, although differentiation was much less marked, presumably due to the greater dispersal of cpdna via pollen.
学科主题	生物化学 ; 分子生物学
WOS标题词	science & technology ; life sciences & biomedicine
类目[WOS]	biochemistry & molecular biology ; ecology ; evolutionary biology
研究领域[WOS]	biochemistry & molecular biology ; environmental sciences & ecology ; evolutionary biology
关键词[WOS]	population genetic-structure ; qinghai-tibetan plateau ; last glacial maximum ; diploid hybrid pine ; chloroplast dna ; postglacial colonization ; temperate plants ; american conifer ; organelle dna ; black spruce
收录类别	SCI
语种	英语
WOS记录号	WOS:000259525900010
公开日期	2009-12-04
内容类型	期刊论文
源URL	[http://ir.nwipb.ac.cn/handle/363003/1190]
专题	西北高原生物研究所_中国科学院西北高原生物研究所
作者单位	1.Lanzhou Univ, Key Lab Arid & Grassland Ecol, Lanzhou 730000, Peoples R China 2.Chinese Acad Sci, NW Plateau Inst Biol, Key Lab Adaptat & Evolut Plateau Biota, Xining 810001, Qinghai, Peoples R China 3.Univ St Andrews, Sch Biol, St Andrews KY16 9TH, Fife, Scotland 4.Univ Edinburgh, Inst Mol Plant Sci, Edinburgh EH9 3JH, Midlothian, Scotland
推荐引用方式 GB/T 7714	Chen, Kangming,Abbott, Richard J.,Milne, Richard I.,et al. Phylogeography of Pinus tabulaeformis Carr. (Pinaceae), a dominant species of coniferous forest in northern China[J]. molecular ecology,2008,17(19):4276-4288.
APA	Chen, Kangming,Abbott, Richard J.,Milne, Richard I.,Tian, Xin-Min,&Liu, Jianquan.(2008).Phylogeography of Pinus tabulaeformis Carr. (Pinaceae), a dominant species of coniferous forest in northern China.molecular ecology,17(19),4276-4288.
MLA	Chen, Kangming,et al."Phylogeography of Pinus tabulaeformis Carr. (Pinaceae), a dominant species of coniferous forest in northern China".molecular ecology 17.19(2008):4276-4288.