GACD: Integrated Software for Genetic Analysis in Clonal F-1 and Double Cross Populations

doi:10.1093/jhered/esv080

	GACD: Integrated Software for Genetic Analysis in Clonal F-1 and Double Cross Populations
	Zhang, Luyan ; Meng, Lei ; Wu, Wencheng ; Wang, Jiankang 1
刊名	JOURNAL OF HEREDITY
	2015
卷号	106 期号:6 页码:741-744
关键词	clonal species double cross design linkage map construction QTL mapping
ISSN号	0022-1503
DOI	10.1093/jhered/esv080
通讯作者	Zhang, Luyan
英文摘要	Clonal species are common among plants. Clonal F-1 progenies are derived from the hybridization between 2 heterozygous clones. In self-and cross-pollinated species, double crosses can be made from 4 inbred lines. A clonal F-1 population can be viewed as a double cross population when the linkage phase is determined. The software package GACD ( Genetic Analysis of Clonal F-1 and Double cross) is freely available public software, capable of building high-density linkage maps and mapping quantitative trait loci ( QTL) in clonal F-1 and double cross populations. Three functionalities are integrated in GACD version 1.0: binning of redundant markers ( BIN); linkage map construction ( CDM); and QTL mapping ( CDQ). Output of BIN can be directly used as input of CDM. After adding the phenotypic data, the output of CDM can be used as input of CDQ. Thus, GACD acts as a pipeline for genetic analysis. GACD and example datasets are freely available from www. isbreeding. net.
学科主题	Genetics & Heredity
语种	英语
出版者	OXFORD UNIV PRESS INC
WOS记录号	WOS:000368255100008
内容类型	期刊论文
源URL	[http://111.203.20.206/handle/2HMLN22E/4640]
专题	作物科学研究所_分子生物学系
作者单位	1.Chinese Acad Agr Sci, Natl Key Facil Crop Gene Resources & Genet Improv, Beijing 100193, Peoples R China 2.Chinese Acad Agr Sci, Inst Crop Sci, Beijing 100081, Peoples R China 3.Chinese Acad Agr Sci, CIMMYT China Off, Beijing 100081, Peoples R China
推荐引用方式 GB/T 7714	Zhang, Luyan,Meng, Lei,Wu, Wencheng,et al. GACD: Integrated Software for Genetic Analysis in Clonal F-1 and Double Cross Populations[J]. JOURNAL OF HEREDITY,2015,106(6):741-744.
APA	Zhang, Luyan,Meng, Lei,Wu, Wencheng,&Wang, Jiankang.(2015).GACD: Integrated Software for Genetic Analysis in Clonal F-1 and Double Cross Populations.JOURNAL OF HEREDITY,106(6),741-744.
MLA	Zhang, Luyan,et al."GACD: Integrated Software for Genetic Analysis in Clonal F-1 and Double Cross Populations".JOURNAL OF HEREDITY 106.6(2015):741-744.