RseqFlow: workflows for RNA-Seq data analysis

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	RseqFlow: workflows for RNA-Seq data analysis
	Wang, Ying ; Mehta, Gaurang ; Mayani, Rajiv ; Lu, Jingxi ; Souaiaia, Tade ; Chen, Yangho ; Clark, Andrew ; Yoon, Hee Jae ; Wan, Lin ; Evgrafov, Oleg V. ; Knowles, James A. ; Deelman, Ewa ; Chen, Ting ; Wang Y(王颖)
刊名	http://dx.doi.org/10.1093/bioinformatics/btr441
	2011-09-15
关键词	EXPRESSION ALIGNMENT PIPELINE GENOME
英文摘要	NIH/NIMH [5 RC2 MH090047-01]; Transcriptional Atlas of Human Brain Development (TAHBD); Center of Excellence of Genome Sciences: Genomic Analysis of the Genotype-Phenotype Map (NIH/HG) [2 P50 HG002790-06]; We have developed an RNA-Seq analysis workflow for single-ended Illumina reads, termed RseqFlow. This workflow includes a set of analytic functions, such as quality control for sequencing data, signal tracks of mapped reads, calculation of expression levels, identification of differentially expressed genes and coding SNPs calling. This workflow is formalized and managed by the Pegasus Workflow Management System, which maps the analysis modules onto available computational resources, automatically executes the steps in the appropriate order and supervises the whole running process. RseqFlow is available as a Virtual Machine with all the necessary software, which eliminates any complex configuration and installation steps. Availability and implementation: http://genomics.isi.edu/rnaseq Contact: wangying@xmu.edu.cn;
语种	英语
出版者	BIOINFORMATICS
内容类型	期刊论文
源URL	[http://dspace.xmu.edu.cn/handle/2288/92412]
专题	信息技术－已发表论文
推荐引用方式 GB/T 7714	Wang, Ying,Mehta, Gaurang,Mayani, Rajiv,et al. RseqFlow: workflows for RNA-Seq data analysis[J]. http://dx.doi.org/10.1093/bioinformatics/btr441,2011.
APA	Wang, Ying.,Mehta, Gaurang.,Mayani, Rajiv.,Lu, Jingxi.,Souaiaia, Tade.,...&王颖.(2011).RseqFlow: workflows for RNA-Seq data analysis.http://dx.doi.org/10.1093/bioinformatics/btr441.
MLA	Wang, Ying,et al."RseqFlow: workflows for RNA-Seq data analysis".http://dx.doi.org/10.1093/bioinformatics/btr441 (2011).