Comparative genomics analysis of decapod shrimps in the Pancrustacea Glade

CORC > 海洋研究所 > 中国科学院海洋研究所 > 实验海洋生物学重点实验室

	Comparative genomics analysis of decapod shrimps in the Pancrustacea Glade
	Yuan, Jianbo; Zhang, Xiaojun; Liu, Chengzhang; Sun, Xiaoqing; Sivaramasamy, Elayaraja; Li, Fuhua; Xiang, Jianhai
刊名	BIOCHEMICAL SYSTEMATICS AND ECOLOGY
	2016-02-01
卷号	64 页码:111-121
关键词	Shrimp Pancrustacea Crustacea Divergence time Gene family
英文摘要	A reference genome is important for genomic and phylogenomic analysis, but except for a brachiopod Daphnia pulex, other crustacean genomes have not been completely sequenced. As one of the most economically important crustaceans, decapod shrimps have attracted great attentions worldwide. But the highly complexity block us from completing shrimp genomes. To explore the decapod shrimp genomes, we performed phylogenomic and comparative genomics analyses of pancrustaceans using transcriptome data. A group of 85 single-copy genes were collected from two shrimps and seven genome-available arthropods for phylogenetic analysis. It was found that the two major members of Pancrustacea, Hexapoda and Crustacea, fall into respective monophyletic clades. D. pulex and shrimps were estimated divergent at about 395 Myr and the gene family compositions were significantly different between them. The gene families involved in ion binding, peroxidase activity and cytoskeletal part were significantly expanded in shrimps, which were considered tightly associated with the seawater environment adaptation. When comparing the two shrimps, gene families involved in synapse in Litopenaeus vannamei and cellular component in Penaeus monodon showed significant expansion, which implies the nervous system of L. vannamei and cellular structure of P. monodon might be adaptively evolved respectively. (C) 2015 Elsevier Ltd. All rights reserved.
收录类别	SCI
语种	英语
WOS记录号	WOS:000370891300017
公开日期	2016-05-03
内容类型	期刊论文
源URL	[http://ir.qdio.ac.cn/handle/337002/112486]
专题	海洋研究所_实验海洋生物学重点实验室
作者单位	Chinese Acad Sci, Inst Oceanol, Key Lab Expt Marine Biol, Qingdao 266071, Peoples R China
推荐引用方式 GB/T 7714	Yuan, Jianbo,Zhang, Xiaojun,Liu, Chengzhang,et al. Comparative genomics analysis of decapod shrimps in the Pancrustacea Glade[J]. BIOCHEMICAL SYSTEMATICS AND ECOLOGY,2016,64:111-121.
APA	Yuan, Jianbo.,Zhang, Xiaojun.,Liu, Chengzhang.,Sun, Xiaoqing.,Sivaramasamy, Elayaraja.,...&Xiang, Jianhai.(2016).Comparative genomics analysis of decapod shrimps in the Pancrustacea Glade.BIOCHEMICAL SYSTEMATICS AND ECOLOGY,64,111-121.
MLA	Yuan, Jianbo,et al."Comparative genomics analysis of decapod shrimps in the Pancrustacea Glade".BIOCHEMICAL SYSTEMATICS AND ECOLOGY 64(2016):111-121.